File:BSim-An-Agent-Based-Tool-for-Modeling-Bacterial-Populations-in-Systems-and-Synthetic-Biology-pone.0042790.s012.ogv
Summary
Description |
English: Synchronized genetic oscillators. Simulation of 200 bacteria swimming randomly in a 100×100×100 micron volume with wrapping boundary conditions. Each bacterium uses a system of ODEs to model the essential dynamics of the repressilator gene regulatory network. All bacteria are initialized with random initial conditions, but quickly become synchronized due to AHL communication. The color of the bacteria corresponds to their internal level of lacI mRNA, with yellow representing a low and red a high level. AHL concentration within the environment is shown in blue. |
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Source | Video S2 from Gorochowski T, Matyjaszkiewicz A, Todd T, Oak N, Kowalska K, Reid S, Tsaneva-Atanasova K, Savery N, Grierson C, di Bernardo M (2012). "BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology". PLOS ONE. DOI:10.1371/journal.pone.0042790. PMID 22936991. PMC: 3427305. | ||
Author | Gorochowski T, Matyjaszkiewicz A, Todd T, Oak N, Kowalska K, Reid S, Tsaneva-Atanasova K, Savery N, Grierson C, di Bernardo M | ||
Permission (Reusing this file) |
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Category:Bacterial biochemistry
Category:CC-BY-2.5
Category:Media from PLOS ONE
Category:Microbial ecology
Category:Ogv videos
Category:Population models
Category:Regulatory networks
Category:Synthetic biology
Category:Uploaded with Open Access Media Importer
Category:Uploaded with Open Access Media Importer and needing category review
Category:Video display resolution 720 x 540
Category:Videos from open-access scholarly articles
Category:Videos of bioinformatics
Category:Videos of computer modelling
Category:Videos of computer simulations
Category:Videos of systems biology