File:BSim-An-Agent-Based-Tool-for-Modeling-Bacterial-Populations-in-Systems-and-Synthetic-Biology-pone.0042790.s012.ogv

Summary

Description
English: Synchronized genetic oscillators. Simulation of 200 bacteria swimming randomly in a 100×100×100 micron volume with wrapping boundary conditions. Each bacterium uses a system of ODEs to model the essential dynamics of the repressilator gene regulatory network. All bacteria are initialized with random initial conditions, but quickly become synchronized due to AHL communication. The color of the bacteria corresponds to their internal level of lacI mRNA, with yellow representing a low and red a high level. AHL concentration within the environment is shown in blue.
Date
Source Video S2 from Gorochowski T, Matyjaszkiewicz A, Todd T, Oak N, Kowalska K, Reid S, Tsaneva-Atanasova K, Savery N, Grierson C, di Bernardo M (2012). "BSim: An Agent-Based Tool for Modeling Bacterial Populations in Systems and Synthetic Biology". PLOS ONE. DOI:10.1371/journal.pone.0042790. PMID 22936991. PMC: 3427305.
Author Gorochowski T, Matyjaszkiewicz A, Todd T, Oak N, Kowalska K, Reid S, Tsaneva-Atanasova K, Savery N, Grierson C, di Bernardo M
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Category:Videos of bioinformatics Category:Population models Category:Regulatory networks Category:Synthetic biology Category:Videos of systems biology Category:Bacterial biochemistry Category:Microbial ecology Category:Videos of computer modelling Category:Videos of computer simulations Category:Media from PLOS ONE Category:Uploaded with Open Access Media Importer Category:Videos from open-access scholarly articles Category:Uploaded with Open Access Media Importer and needing category review Category:Ogv videos Category:Video display resolution 720 x 540
Category:Bacterial biochemistry Category:CC-BY-2.5 Category:Media from PLOS ONE Category:Microbial ecology Category:Ogv videos Category:Population models Category:Regulatory networks Category:Synthetic biology Category:Uploaded with Open Access Media Importer Category:Uploaded with Open Access Media Importer and needing category review Category:Video display resolution 720 x 540 Category:Videos from open-access scholarly articles Category:Videos of bioinformatics Category:Videos of computer modelling Category:Videos of computer simulations Category:Videos of systems biology