File:A-workflow-to-process-3D+time-microscopy-images-of-developing-organisms-and-reconstruct-their-cell-ncomms9674-s9.ogv

Summary

Description
English: Supplementary Movie 8 Selected cells including eight progenitors of the primary notochord are highlighted with colored dots at the onset of gastrulation. One cell (in yellow) is kept at a fixed position throughout the movie. Color code is propagated along the tracking to reveal the cells' clonal history and displacement in space and time. A single orthoslice of the raw data (in gray levels) is automatically adjusted to follow the selected yellow cell. The other cells do not necessarily remain in the same plane, but are accurately tracked. The whole dataset was validated and corrected to become a gold standard (Mov-IT visualization tool).
Date
Source Video file from Faure E, Savy T, Rizzi B, Melani C, Stašová O, Fabrèges D, Špir R, Hammons M, Čúnderlík R, Recher G, Lombardot B, Duloquin L, Colin I, Kollár J, Desnoulez S, Affaticati P, Maury B, Boyreau A, Nief J, Calvat P, Vernier P, Frain M, Lutfalla G, Kergosien Y, Suret P, Remešíková M, Doursat R, Sarti A, Mikula K, Peyriéras N, Bourgine P (2016). "A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage". Nature Communications. DOI:10.1038/ncomms9674. PMID 26912388. PMC: 4773431.
Author Faure E, Savy T, Rizzi B, Melani C, Stašová O, Fabrèges D, Špir R, Hammons M, Čúnderlík R, Recher G, Lombardot B, Duloquin L, Colin I, Kollár J, Desnoulez S, Affaticati P, Maury B, Boyreau A, Nief J, Calvat P, Vernier P, Frain M, Lutfalla G, Kergosien Y, Suret P, Remešíková M, Doursat R, Sarti A, Mikula K, Peyriéras N, Bourgine P
Permission
(Reusing this file)
w:en:Creative Commons
attribution
This file is licensed under the Creative Commons Attribution 4.0 International license.
You are free:
  • to share – to copy, distribute and transmit the work
  • to remix – to adapt the work
Under the following conditions:
  • attribution – You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.
Category:CC-BY-4.0#A-workflow-to-process-3D+time-microscopy-images-of-developing-organisms-and-reconstruct-their-cell-ncomms9674-s9.ogv
Provenance
InfoField
This file was transferred to Wikimedia Commons from PubMed Central by way of the Open Access Media Importer.
WikiProject Open Access
WikiProject Open Access
Category:Uploaded with Open Access Media Importer
Category:Cell lines Category:Cell proliferation Category:Three-dimensional imaging videos Category:Echinoidea Category:Media from Nature Communications Category:Uploaded with Open Access Media Importer Category:Uploaded with Open Access Media Importer and needing category review Category:Videos from open-access scholarly articles Category:Ogv videos Category:Video display resolution 672 x 500
Category:CC-BY-4.0 Category:Cell lines Category:Cell proliferation Category:Echinoidea Category:Media from Nature Communications Category:Ogv videos Category:Three-dimensional imaging videos Category:Uploaded with Open Access Media Importer Category:Uploaded with Open Access Media Importer and needing category review Category:Video display resolution 672 x 500 Category:Videos from open-access scholarly articles