File:Chromatin-Loops-as-Allosteric-Modulators-of-Enhancer-Promoter-Interactions-pcbi.1003867.s009.ogv
Summary
Description |
English: Langevin Dynamics of a 30 kb permanent loop formed in a 1 Mb region of chromatin fiber, as in Figure 2. The polymer is colored according to the facilitation arrangement, where the loop (black) occurs in the region between the enhancer (yellow) and the promoter (blue). The movie is presented at a rate of 1000 simulated time-steps per one second of real time; every seventh frame of the movie corresponds to a computationally obtained conformation, with quadratic interpolation performed between subsequent conformations (done to avoid high-frequency fluctuations between neighboring frames). The total simulation time for each run of each parameter set was approximately 5,000 times longer than the part of simulation displayed in this movie. |
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Date | |||
Source | Video S1 from Doyle B, Fudenberg G, Imakaev M, Mirny L (2014). "Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions". PLOS Computational Biology. DOI:10.1371/journal.pcbi.1003867. PMID 25340767. PMC: 4207457. | ||
Author | Doyle B, Fudenberg G, Imakaev M, Mirny L | ||
Permission (Reusing this file) |
This file is licensed under the Creative Commons Attribution 4.0 International license.
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Provenance |
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Category:CC-BY-4.0
Category:Enhancer elements
Category:Gene expression
Category:Gene regulation
Category:Media from PLOS Computational Biology
Category:Ogv videos
Category:Uploaded with Open Access Media Importer
Category:Uploaded with Open Access Media Importer and needing category review
Category:Video display resolution 800 x 600
Category:Videos from open-access scholarly articles