File:Chromatin-Loops-as-Allosteric-Modulators-of-Enhancer-Promoter-Interactions-pcbi.1003867.s009.ogv

Summary

Description
English: Langevin Dynamics of a 30 kb permanent loop formed in a 1 Mb region of chromatin fiber, as in Figure 2. The polymer is colored according to the facilitation arrangement, where the loop (black) occurs in the region between the enhancer (yellow) and the promoter (blue). The movie is presented at a rate of 1000 simulated time-steps per one second of real time; every seventh frame of the movie corresponds to a computationally obtained conformation, with quadratic interpolation performed between subsequent conformations (done to avoid high-frequency fluctuations between neighboring frames). The total simulation time for each run of each parameter set was approximately 5,000 times longer than the part of simulation displayed in this movie.
Date
Source Video S1 from Doyle B, Fudenberg G, Imakaev M, Mirny L (2014). "Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions". PLOS Computational Biology. DOI:10.1371/journal.pcbi.1003867. PMID 25340767. PMC: 4207457.
Author Doyle B, Fudenberg G, Imakaev M, Mirny L
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Category:Gene expression Category:Gene regulation Category:Enhancer elements Category:Media from PLOS Computational Biology Category:Uploaded with Open Access Media Importer Category:Uploaded with Open Access Media Importer and needing category review Category:Videos from open-access scholarly articles Category:Ogv videos Category:Video display resolution 800 x 600
Category:CC-BY-4.0 Category:Enhancer elements Category:Gene expression Category:Gene regulation Category:Media from PLOS Computational Biology Category:Ogv videos Category:Uploaded with Open Access Media Importer Category:Uploaded with Open Access Media Importer and needing category review Category:Video display resolution 800 x 600 Category:Videos from open-access scholarly articles