File:Chaste-An-Open-Source-C++-Library-for-Computational-Physiology-and-Biology-pcbi.1002970.s004.ogv

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English: 3D off-lattice simulation confined to a 2D surface: small intestinal crypts and villus. Left: cells are labelled according to their ancestor cell; each crypt gives rise to a monoclonal population, with a multiclonal villus comprised of cells from each crypt. Right: the same simulation, here with cells labelled according to Delta levels (non-dimensionalised); Delta-Notch patterning occurs due to a signalling model inside each cell, which depends on the activity of neighbouring cells, and is thought to lead to differentiation into secretory and absorbative cell types. The simulation runs from to hours.
Date
Source Video S2 from Mirams G, Arthurs C, Bernabeu M, Bordas R, Cooper J, Corrias A, Davit Y, Dunn S, Fletcher A, Harvey D, Marsh M, Osborne J, Pathmanathan P, Pitt-Francis J, Southern J, Zemzemi N, Gavaghan D (2013). "Chaste: An Open Source C++ Library for Computational Physiology and Biology". PLOS Computational Biology. DOI:10.1371/journal.pcbi.1002970. PMID 23388716. PMC: 3597547.
Author Mirams G, Arthurs C, Bernabeu M, Bordas R, Cooper J, Corrias A, Davit Y, Dunn S, Fletcher A, Harvey D, Marsh M, Osborne J, Pathmanathan P, Pitt-Francis J, Southern J, Zemzemi N, Gavaghan D
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Category:Videos of bioinformatics Category:Videos of developmental biology Category:Pattern formation Category:Videos of systems biology Category:Videos of theoretical biology Category:C++ Category:Videos of computer modelling Category:Videos of numerical analysis Category:Videos of finite element analysis Category:Biophysical simulations Category:Cell motility Category:Interdisciplinary physics Category:Media from PLOS Computational Biology Category:Uploaded with Open Access Media Importer Category:Videos from open-access scholarly articles Category:Uploaded with Open Access Media Importer and needing category review Category:Ogv videos Category:Video display resolution 1036 x 852
Category:Biophysical simulations Category:C++ Category:CC-BY-2.5 Category:Cell motility Category:Interdisciplinary physics Category:Media from PLOS Computational Biology Category:Ogv videos Category:Pattern formation Category:Uploaded with Open Access Media Importer Category:Uploaded with Open Access Media Importer and needing category review Category:Video display resolution 1036 x 852 Category:Videos from open-access scholarly articles Category:Videos of bioinformatics Category:Videos of computer modelling Category:Videos of developmental biology Category:Videos of finite element analysis Category:Videos of numerical analysis Category:Videos of systems biology Category:Videos of theoretical biology